publications

 
Selected publications
  2012
   
81

R. Rezaei Araghi, C. Mahrenholz, R. Volkmer, B. Koksch, Investigation of the network of prefered interactions in an artificial coiled-coil association using the peptide array technique, Beilstein Journal of Organic Chemistry, 2012, 8, 640-649.

   
80

E. Brandenburg, H.v. Berlepsch, B. Koksch, Specific in situ discrimination of amyloid fibrils versusα-helical fibres by the fluorophore NIAD-4. Mol Biosyst. 2012 Feb; 8(2):557-64.

   
79 M. Salwiczek, E. K. Nyakatura, U. I. M. Gerling, S. Ye, B. Koksch, Fluorinated Amino Acids: Compatibility with native protein structures and effects on protein-protein interactions. ChemSocRev 2012, 41, 2135-2171
   
78 T. Vagt, M. Salwiczek, B. Koksch, Molecular interactions of fluorinated amino acids within the hydrophobic core of a coiled coil peptide: In V. Gouverneur, K. Müller (Eds.) Fluorine in pharmaceutical and medicinal chemistry: From biophysical aspects to clinical applications, Imperial College Press, 2012, Vol.6, 33-59.
   
  2011
   
77 R. Rezaei Araghi, C. Baldauf, U.I.M. Gerling, C. D. Cadicamo, B. Koksch, A systematic study of fundamentals in a-helical coiled coil mimicry by alternating sequences of b- und g-amino acids, Amino Acids 2011, 41, 733-742
   
76 E. Brandenburg, H. v. Berlepsch, U.I.M. Gerling, C. Böttcher, B. Koksch, Inhibition of Amyloid Aggregation by Formation of Helical Assemblies. Chemistry - A European Journal, 2011, 17(38), 10651–10661
   
75 U.I.M. Gerling, E. Brandenburg, H.v. Berlepsch, K. Pagel, B. Koksch, Structure Analysis of an Amyloid-Forming Model Peptide by a Systematic Glycine and Proline Scan. Biomacromolecules. 2011, 12(8), 2988-96
   
74 A. Kashiwada, M. Tsuboi, N.Takamura, E. Brandenburg, K. Matsuda, B. Koksch, Design and characterization of endosomal-pH-responsive coiled coil for constructing artificial membrane fusion system. Chemistry - A European Journal, 2011, 17, 6179 – 6186
   
73 R. Rezaei Araghi, B. Koksch, A helix-forming α-chimeric peptide with catalytic activity: a hybrid peptide ligase. B. Chem. Commun., 2011, 47, 3544-3546
   
  2010
   
72 J.A. Falenski, M. Broncel, S.C. Wagner, C. Hackenberger, B.Koksch. How Posttranslational modifications influence amyloid formation: A systematic study of phosphorylation and glycosylation in model peptides. Chem. Eur. J. 2010, 16(26), 7881-7888
   
71 S.C. Wagner, M. Roskamp, M. Pallerla, R.R. Araghi, S. Schlecht, B. Koksch. Nanoparticle-induced peptide folding and aggregation. Small, 2010, 6(12), 1321-1328
   
70 J.A. Falenski, U. Gerling, B. Koksch. Multiple glycosylation of de novo designed alpha-helical coiled coil peptides. Bioorg. Med. Chem. 2010, 18, 3703-3706
   
69 H.v. Berlepsch, E. Brandenburg, B. Koksch, C. Böttcher, Peptide adsorption to cyanine dye aggregrates revealed by cryro-transmission electron microscopy, Langmuir, 2010, 26, 11452-11460
   
68 M. Hoernke, B. Koksch, G. Brezesinski, Influence of the hydrophobic
interface and transition metal ions on the conformation of amyloidogenic
model peptides, Biophysical Chemistry, 2010, 150, 64-72
   
67 S. Ye, A. Berger, D. Petzold, O. Reimann, B. Matt, B. Koksch. Chemical aminoacylation of tRNAs with fluorinated amino acids for in vitro protein mutagenesis. Beilstein J Org Chem., 2010, 6, 40
   
66 M. Broncel, S.C. Wagner, C. Hackenberger, B. Koksch. Towards understanding secondary structure transitions: phosphorylation and metal coordination in model peptides. Org. Biomol. Chem., 2010, 8, 2575-2579
   
65 M. Broncel, S.C. Wagner, C. Hackenberger, B. Koksch, Ezymatically triggered amyloid formation: an approach for studying aggregation, Chem. Comm., 2010, 46, 3080-3082
   
64

P. Kupser, K. Pagel, J. Oomens, N. Polfer, B. Koksch, G. Meijer, G. von Helden, Amide-I and -II vibrations of the cyclic β-sheet model peptide gramicidin S in the gas phase, J. Am. Chem. Soc., 2010, 132, 2085-2093

   

63

 

T. Vagt, E. Nyakatura, C. Jäckel, B. Koksch, Approaches towards identifying preferred interaction partners of fluorinated amino acids within the hydrophobic environment of a dimeric coiled-coil peptide, Org. Biomol. Chem., 2010, 8, 1382-1386
   
62

R.R. Araghi, C. Jäckel, M. Salwiczek, S.C. Wagner, S. Wieczorek, C. Baldauf, B. Koksch, A β/γ motif to mimic α-helical turns in proteins
ChemBioChem, 2010, 11, 335-339

   
  2009
   
61 Sergey A. Samsonov, M. Salwiczek, Gerd Anders, B. Koksch, M. T. Pisabarro, Fluorine in Protein Environments: A QM and MD Study, J. Phys. Chem. B, 2009, 113, 16400-16408
   
60 M. Salwiczek, B. Koksch, Effects of fluorination on the folding kinetics of a heterodimeric coiled coil, ChemBioChem, 2009, 10, 2867-2870
   
59 J. Becaud, L. Mu, M. Karramkam, P.A. Schubiger, S.M. Ametamey, K. Graham, T. Stellfeld, L. Lehmann, S. Borkowski, D. Berndorff, L. Dinkelborg, A. Srinivasan, R. Smits, B. Koksch. Direct one-step 18F-labeling of peptides via nucleophilic aromatic substitution. Bioconjugate Chem., 2009, 20(12), 2254-2261
   
58 D. Maisch, P. Wadhwani, S. Afonin, C. Böttcher, B. Koksch, A.S. Ulrich, Chemical labeling strategy with (R)- and (S)-trifluoromethylalanie for solid state 19F-NMR analysis of peptaibols in membranes. J. Am. Chem. Soc., 2009, 131(43), 15596-15597
   
57 D.P. Weimann, H.D.F. Winkler, J.A. Falenski, B. Koksch, C.A. Schalley. Highly dynamic motion of crown ethers along oligolysine peptide chains. Nat. Chem., 2009, 1(7), 573-577
   
56 T. Vagt, C. Jaeckel, S. Samsonov, M. T. Pisabarro, B. Koksch, Selection of a buried salt bridge by phage display, Bioorg. Med. Chem. Let. 2009, 19, 3924-3927 pdf
   
55 K. Pagel, P. Kupser, F. Bierau, N. C. Polfer, J. D. Steill, J. Oomens, G. Meijer, B. Koksch, G. von Helden. Gas-phase IR spectra of intact a-helical coiled coil protein complexes, Int. J. Mass Spec. 2009, 283, 161-168
   
54 M. Salwiczek, S. Samsonov, T. Vagt, C. Baldauf, E. Nyakatura, E. Fleige, J. Numata, H. Cölfen, M. T. Pisabarro, and B. Koksch. Position dependent effects of fluorinated amino acids on hydrophobic core formation of a coiled coil heterodimer, Chem. Eur. J. 2009, 15(31), 7628-7636 pdf
   
53

C. D. Cadicamo, V. Asante, M. Abu Ammar, C. Borelli, H. C. Korting, B. Koksch. Investigation of the synthetic route to pepstatin analogues by SPPS using O-protected and O-unprotected statine as building blocks, J. Pep. Science, 2009, 15, 272-277 cadicamo pdf

   
52

S. C. Wagner, M. Roskamp, H. Cölfen, C. Böttcher, S. Schlecht and B. Koksch. Switchable electrostatic interactions between gold nanoparticles and coiled coil peptides direct colloid assembly, Org. Biomol. Chem., 2009, 7, 46-51 cadicamo pdf

   
51 M. Salwiczek, T. Vagt, B. Koksch. Artificial model systems designed to investigate fluorinated amino acids in native protein environments. In Ojima, I. (Ed.) Fluorine in bioorganic and medicinal chemistry, 2009, 391-409
   
  2008
   
50 K. Pagel, B. Koksch. Following polypeptide folding and assembly with conformational switches, Curr. Opin. Chem. Biol. 2008, 12(6), 730-739 cadicamo pdf
   
49 K. Pagel, S.C. Wagner, R.R. Araghi, H. von Berlepsch, C. Böttcher, B. Koksch, Intramolecular Charge Interactions as a Tool to Control the Coiled-Coil-to-Amyloid Transformation, Chem. Eur. J. 2008, 14(36), 11442-11451 cadicamo pdf
   
48 M. Salwiczek, C. Jaeckel, B. Koksch. Molecular interactions of fluorine in a native polypeptide environment. In: A. Tressaud, G. Haufe (Eds.) Fluorine & Health Molecular Imaging, Biomedical Materials and Pharmceuticals, Elsevier, 2008, pp. 737-759
   
47

S. Piehl, T. Heberer, G. Balizs, T.S. Scanlan, R. Smits, B. Koksch, J. Köhrle. Identification of thyronamines as isozyme specific deiodinase substrates, Endocrinology, 2008, 149(6), 3037-3045

   
46 R. Smits, C.D. Cadicamo, K. Burger, B. Koksch. Synthetic strategies to a-trifluoromethyl and a-difluoromethyl substituted a-amino acides, Chem.Soc.Rev. 2008, 37, 1727-1739
   
45 K. Pagel, T. Seri, H. von Berlepsch, J. Griebel, R. Kirmse, C. Böttcher, B. Koksch. How metal ions affect amyloid formation - Cu2+ and Zn2+ sensitive peptides, ChemBioChem., 2008, 9(4), 531-536
   
  2007
   
44 J. Spengler, B. Koksch, F. Albericio, Simple machine-assisted protocol for solid-phase synthesis of depsipeptides, Biopol. Pept. Sci. 2007, 88(6), 823-826
   
43

J. Scheike, C. Baldauf, J. Spengler, R. Albericio, M. T. Pisabarro, B. Koksch. Estersubstitutionen in a-helicalen Coiled-Coil-Peptiden: Effekt der Eliminierung von Wasserstoffbrücken auf die Struktur von Proteinen. Angew. Chem. 2007, 119, 7912-7916 ; Amide to ester substitution in coiled coils - The effect of H-bond elimination on protein structure formation. Angew. Chem. Int. Ed. 2007, 46, 7766-7769

   
42 M. Hakelberg, B. Koksch. Fluorine in Peptides. Coiled coil model systems as tools to evaluate the influence of fluorinated amino acids on structure and stability of peptides. Chemistry Today, 2007, (4)25, 22-26
   
  2006
   
41 R. Smits, B. Koksch. How C-alpha-Fluoroalkyl Amino Acids and Peptides Interact with Enzymes: Studies concerning the influence on proteolytic stability, enzymatic resolution and peptide coupling. Curr. Top. Med. Chem., 2006, 16, 1483-1498
   
40

C. Jäckel, M. Salwiczek, B. Koksch. Fluorine in a native protein environment - How the spatial demand and polarity of fluoralkyl groups affect protein folding. Angew. Chem. Int. Ed. 2006, 45, 4198-4203. Published online on May 12, 2006 ( in German)

   
39

T. Vagt, O. Zschörnig, D. Huster, B. Koksch. Membrane Binding and Structure of De Novo Designed alpha-Helical Cationic Coiled-Coil-Forming Peptides, ChemPhysChem., 2006, 7, 1361-1371

   
38 K. Pagel, S.C. Wagner, K. Samedov, H. v. Berlepsch, C. Böttcher, B. Koksch. Random coils, b-sheet ribbons and a-helical fibers - one peptide adopting three different secondary structures at will. J. Am. Chem. Soc., 2006, 128 (7), 2196-2197
   
  2005
   
37 A. Pinero, A. Villa, T. Vagt, B. Koksch, A. E. Mark. The formation, stability, and oligomerization state of two designed coiled coils. A molecular dynamics study. Biophys. J., 2005, 89, 1-13
   
36 C. Jaeckel and B. Koksch. Fluorine in peptide design and protein engineering. Eur. J. Org. Chem., 2005, 21, 4482-4503
   
35

K. Pagel, T. Vagt, B. Koksch, Directing polypeptide's secondary structure at will - from a-helix to amyloids and reverse? Org. Biomol. Chem., 2005, 3, 3843-3850 . Review: Jekyll and Hyde protein in brain disease? Chemistry World, 2005, 2(11)

   
34 B. Dreier, R. P. Fuller, D. J. Segal, C. Lund, P. Blancafort, A. Huber, B. Koksch, and C. F. Barbas, III, Development of zinc finger domains for recognition of the 5'-CNN-3' family DNA sequences and their use in the construction of artificial transcription factors, J. Biol. Chem., 2005, 280 (42), 35588-35597
   
33 K. Pagel, T. Vagt, T. Kohajda, B. Koksch, From α-helix to β-sheet – a reversible metal ion induced peptide secondary structure switch, Org. Biomol. Chem., 2005, 3, 2500-2502 , Review: Switching Off Neurodegenerative Disease, Chemistry World 2005, 2 (8)
   
32 K. Pagel, B. Seiwert, K. Seeger, S. Berger, A. Mark, B. Koksch. Advanced approaches for the characterization of a de dovo designed antiparallel coiled coil peptide. Org. Biomol. Chem. 2005, 3, 1189-1194 , cover page illustration cover page
   
31 C. Jaeckel, B. Koksch. Using the potential of fluorine for peptide and protein modification. In: V. Soloshonok (ed.), Fluorine containing synthons ACS Symposium Series 911. American Chemical Society, 2005, 611-635.
   
  S. K. Ritter, Fluorine Rises to the Occasion, Chem. Eng. News 2005, 83 (7), 35-40 . (Article on Koksch fluorine work)
   
  2004
   
30 K. Burger, M. Kluge, S. Fehn, B. Koksch, C. Böttcher, L. Hennig, G. Müller. Hexafluroacetone as a protecting and activating reagent. A new approach to O-glycosides. Heterocycles. 64, 2004, 143-152
   
29 S. N. Osipov, T. Lange, P. Tsouker, J. Spengler, L. Henning, B. Koksch, S. Berger, S. M. El-Kousy, K. Burger. Hexafluoroacetone as a protecting and activating reagent: Synthesis of fluorosubstituted α-amino, α-hydroxy and α-mercapto acids. Synthesis, 2004, 1821-1829
   
28 C. Jaeckel, W. Seufert, S. Thust, B. Koksch. Evaluation of the molecular interactions of fluorinated amino acids with native polypeptides. ChemBioChem., 2004, 5, 717-720 
   
27 B. Koksch, T. Michel, P. Kaptain, P. Quaedflieg, Q.B. Broxterman. Enzymatic resolution of Ca-fluoroalkyl amino acids. Tetrahedron: Asymmetry, 2004, 15, 1401-1407
   
26 S. Thust, B. Koksch. Discovery of carboxypeptidase Y as catalyst for the incorporation of sterically demanding a-fluoroalkyl amino acids into peptides. Tetrahedron Lett. 2004, 45, 1163-1165
   
25 B. Koksch, Ch. Dahl, G. Radics, A. Vocks, K. Arnold, J. Arnhold, J. Sieler, K. Burger. Fluoro-modified chemotactic peptides: fMLF analogues. J.Pept.Sci. 2004, 10, 67-81
   
  2003
   
24 S. Thust, B. Koksch. Protease catalized peptide synthesis for the site-specific incorporation of C-alpha-fluoroalkyl amino acids into peptides. J.Org.Chem. 2003, 68, 2290-2296
   
23 G. Radics, B. Koksch. S.M. El-Kousy, J. Spengler, K. Burger, L-α-methylhomoisoserine, a new versatile building block for peptide and depsipeptide modification. Synlett. 2003, 1826-1829
   
22 G. Radics, R. Pires, B. Koksch, S.M. El-Kousy, K. Burger. New building blocks for peptide and depsipeptide synthesis: hexafluoroacetone protected L-homoisoserine and D,L-homoisocysteine derivatives. Tetrahedron Letters 2003, 44, 1059-1062
   
21 D.J. Segal, R. Beerli, P. Blancafort, B. Dreier, K. Effertz, A. Huber, B. Koksch, C.V. Lund, L. Magnenat, D. Valente, C.F. Barbas III. Evaluation of a Modular Strategy for the Construction of Novel Polydactyl Zinc Finger DNA-Binding Proteins. Biochemistry 2003, 42, 2137-2148
   
  2002
   
20 T. Michel, B. Koksch, S.N. Osipov, A.S. Gobulev, J. Sieler, K. Burger. Peptide synthesis with C-alpha-(difluoromethyl)-substituted alpha-amino acids. Coll.Czech.Chem.Comm. 2002, 67, 1533-1559
   
  2001
   
19 S.N. Osipov, N.M. Kobel´kova, A.F. Kolomiets, K. Pumpor, B. Koksch, K. Burger. alpha-Fluoromethyl tryptophanes via imino ene reactions. Synlett 2001, 1287-1289
   
18 M. Moroni, B.Koksch, S.N. Osipov, M. Crucianelli, M. Frigerio, P. Bravo, K. Burger. First Synthesis of orthogonal protected alpha-Tfm-and alpha-Dfm-Arginines. J. Org. Chem. 2001, 66, 130-133
   
  2000
   
17 S. Thust, B. Koksch, K. Burger. Protease catalyzed synthesis of alpha-fluoroalkyl substituted peptides. Peptides: Proceedings of the Twenty-Sixth European Peptide Symposium
   
16 B. Koksch, K. Mütze, S.N. Osipov, A.S. Gobulev, K. Burger. Synthesis of highly fluorinated dipeptide building blocks. Tetrahedron Lett. 2000, 41, 3825-3828
   
  pre 2000
   
15 K. Burger, M. Kluge, S. Fehn, B. Koksch, L. Hennig, G. Mueller. Ein neuer Zugang zu Glycopeptiden. Angew. Chem. 1999, 111, 1513-1515; Angew. Chem. Int. Ed. Engl. 1999, 38, 1414-1416
   
14 F. Bordusa, Ch. Dahl, H.-D. Jakubke, K. Burger, B. Koksch. Synthesis of alpha-fluoroalkyl substituted peptides via enzymatic fragment condensation. Tetrahedron: Asymmetry 1999, 10, 307-313
   
13 B. Koksch, H.-D. Jakubke, H. Wenschuh, K. Dietmeier, A. Starostin, A. Wooley, M. Dathe, G. Müller, M. Gußmann, H.-J. Hofmann, Th. Michel, K. Burger. Influence of α-Fluoroalkyl Substituted Amino Acids on Secondary Structure of Peptides. Peptides: Proceedings of the Twenty-Fifth European Peptide Symposium (eds. S. Bajusz and F. Hudecz) Académiai Kiadó, Budapest, 1998, 670-671
   
12 K. Burger, K. Mütze, W. Hollweck, B. Koksch. Incorporation of alpha-Trifluoromethyl Substituted α-Amino Acids into the C- and N-terminal Position of Peptides and Peptide Mimetics Applying Multicomponent Reactions (MCRs). Terahedron 1998, 54, 5915-5928
   
11 B. Koksch, H.-D. Jakubke, H.-J. Hofmann, M. Gußmann, and K. Burger. Influence of α-fluoroalkyl substituted amino acids on secondary structure and properties of peptides. Amino Acids 1997, 13, 73
   
10 B. Koksch, N. Sewald, H.-J. Hofmann, K. Burger, H.-D. Jakubke. Proteolytically stable peptides by incorporation of alpha-Tfm amino acids. J. Peptide Sci., 1997, 3, 157-167
   
9 B. Koksch, U. Überham, H.-D. Jakubke. Untersuchungen zur Stabilität von N-Benzyloxycarbonyl-geschütztem a-Trifluormethylglycinmethylester. Pharmazie, 1997, 52, 74-75
   
8 B. Koksch, N. Sewald, K. Burger, H.-D. Jakubke. Peptide modification by incorporation of a-trifluoromethyl substituted amino acids. Amino Acids, 1996, 11, 425-434
   
7 B. Koksch, D. Ullmann, H.-D. Jakubke, K. Burger. Synthesis, Structure and Biological Activity of α-Trifluoromethyl Substituted Thyreotropin Releasing Hormone. J. Fluorine Chem., 1996, 80, 53-57
   
6 B. Koksch, N. Sewald, H.-D. Jakubke and K. Burger. Synthesis and incorporation of a-trifluoromethyl-substituted amino acids into peptides. In I. Ojima, J. R. McCarthy, J. T. Welch (Eds.) Biomedical frontiers of fluorine chemistry ACS Symposium Series 639. American Chemical Society, Washington, DC, 1996, 42-58
   
5 N. Sewald, W. Hollweck, K. Mütze, C. Schierlinger, L. C. Seymour, K. Gaa, K. Burger, B. Koksch, H.-D. Jakubke. Peptide modification by introduction of a-trifluoromethyl substituted amino acids. Amino Acids, 1995, 8, 187-194
   
4 N. Sewald, W. Hollweck, K. Mütze, L. C. Seymour, S. N. Osipov, C. Schierlinger, K. Burger, B. Koksch, H.-D. Jakubke. Synthesis of trifluoromethyl substituted amino acids and their incorporation into peptides. Peptides 1994: Proceedings of the Twenty-Third European Peptide Symposium (Hrsg. H. L. S. Maia) Leiden, ESCOM Science Publishers, 1994, 327-328
   
3 B. Koksch, D. Ullmann, H.-D. Jakubke, N. Sewald, K. Burger. Structure and biological activity of alpha-trifluoromethyl substituted GnRH and TRH analogues. Peptides: Proceedings of the Twenty-Third European Peptide Symposium (Hrsg. H.L.S. Maia) Leiden, ESCOM Science Publishers, 1994, 323-324
   
2 K. Burger, C. Schierlinger, K. Mütze, W. Hollweck, B. Koksch. N- und C-terminaler Einbau von alpha-Trifluormethyl-substituierten Aminosäuren in Azapeptide. Liebigs Ann. Chem. 1994, 407-413
   
1 K. Burger, K. Mütze, W. Hollweck, B. Koksch, P. Kuhl, H.-D. Jakubke, J. Riede, A. Schier. Untersuchungen zur proteasekatalysierten und chemischen Peptidbindungsknüpfung mit a-trifluormethylsubstituierten alpha-Aminosäuren. J. prakt. Chem. 1993, 335, 321-331